Amely Branquinho Martins
A New Assessment of Robust Capuchin Monkey (Sapajus) Evolutionary History Using Genome-Wide SNP Marker Data and a Bayesian Approach to Species Delimitation
Martins, Amely Branquinho; Valença-Montenegro, Mônica Mafra; Lima, Marcela Guimarães Moreira; Lynch, Jessica W.; Svoboda, Walfrido Kühl; Silva-Júnior, José de Sousa e; Röhe, Fábio; Boubli, Jean Philippe; Fiore, Anthony Di
Authors
Mônica Mafra Valença-Montenegro
Marcela Guimarães Moreira Lima
Jessica W. Lynch
Walfrido Kühl Svoboda
José de Sousa e Silva-Júnior
Fábio Röhe
Prof Jean Boubli J.P.Boubli@salford.ac.uk
Professor
Anthony Di Fiore
Abstract
Robust capuchin monkeys, Sapajus genus, are among the most phenotypically diverse and widespread groups of primates in South America, with one of the most confusing and often shifting taxonomies. We used a ddRADseq approach to generate genome-wide SNP markers for 171 individuals from all putative extant species of Sapajus to access their evolutionary history. Using maximum likelihood, multispecies coalescent phylogenetic inference, and a Bayes Factor method to test for alternative hypotheses of species delimitation, we inferred the phylogenetic history of the Sapajus radiation, evaluating the number of discrete species supported. Our results support the recognition of three species from the Atlantic Forest south of the São Francisco River, with these species being the first splits in the robust capuchin radiation. Our results were congruent in recovering the Pantanal and Amazonian Sapajus as structured into three monophyletic clades, though new morphological assessments are necessary, as the Amazonian clades do not agree with previous morphology-based taxonomic distributions. Phylogenetic reconstructions for Sapajus occurring in the Cerrado, Caatinga, and northeastern Atlantic Forest were less congruent with morphology-based phylogenetic reconstructions, as the bearded capuchin was recovered as a paraphyletic clade, with samples from the Caatinga biome being either a monophyletic clade or nested with the blond capuchin monkey.
Citation
Martins, A. B., Valença-Montenegro, M. M., Lima, M. G. M., Lynch, J. W., Svoboda, W. K., Silva-Júnior, J. D. S. E., …Fiore, A. D. (2023). A New Assessment of Robust Capuchin Monkey (Sapajus) Evolutionary History Using Genome-Wide SNP Marker Data and a Bayesian Approach to Species Delimitation. Genes, 14(5), 970. https://doi.org/10.3390/genes14050970
Journal Article Type | Article |
---|---|
Acceptance Date | Apr 12, 2023 |
Online Publication Date | Apr 25, 2023 |
Publication Date | Apr 25, 2023 |
Deposit Date | Nov 2, 2023 |
Publicly Available Date | Nov 3, 2023 |
Journal | Genes |
Publisher | MDPI |
Peer Reviewed | Peer Reviewed |
Volume | 14 |
Issue | 5 |
Pages | 970 |
DOI | https://doi.org/10.3390/genes14050970 |
Keywords | Genetics (clinical); Genetics |
Files
Published Version
(3.5 Mb)
PDF
Publisher Licence URL
http://creativecommons.org/licenses/by/4.0/
You might also like
Phylogenetics and an updated taxonomic status of the Tamarins (Callitrichinae, Cebidae)
(2022)
Journal Article
Downloadable Citations
About USIR
Administrator e-mail: library-research@salford.ac.uk
This application uses the following open-source libraries:
SheetJS Community Edition
Apache License Version 2.0 (http://www.apache.org/licenses/)
PDF.js
Apache License Version 2.0 (http://www.apache.org/licenses/)
Font Awesome
SIL OFL 1.1 (http://scripts.sil.org/OFL)
MIT License (http://opensource.org/licenses/mit-license.html)
CC BY 3.0 ( http://creativecommons.org/licenses/by/3.0/)
Powered by Worktribe © 2024
Advanced Search