All Outputs (47)

Comparing the Performance of Three Different Primer Sets for Detecting Mammals Using Environmental DNA (eDNA) Samples (2024)
Thesis

Efficient and cost-effective methods of monitoring vertebrate species are critical for future
conservation management. Environmental DNA (eDNA) metabarcoding from aquatic
environments has been increasingly utilised for biodiversity assessments for... Read More about Comparing the Performance of Three Different Primer Sets for Detecting Mammals Using Environmental DNA (eDNA) Samples.

Citizen scientists’ motivation to participate in environmental DNA (eDNA) surveys: A case study on monitoring mammals in the UK (2023)
Preprint / Working Paper

1. Citizen scientists have become integral participants in nature conservation projects, and the demand for effective conservation efforts has sparked increasing interest in utilizing environmental DNA (eDNA) for species monitoring, drawing citizen s... Read More about Citizen scientists’ motivation to participate in environmental DNA (eDNA) surveys: A case study on monitoring mammals in the UK.

Resource competition drives an invasion‐replacement event among shrew species on an island (2023)
Journal Article

Invasive mammals are responsible for the majority of native species extinctions on islands. While most of these extinction events will be due to novel interactions between species (e.g. exotic predators and naive prey), it is more unusual to find inc... Read More about Resource competition drives an invasion‐replacement event among shrew species on an island.

Universal closed-tube barcoding for monitoring the shark and ray trade in megadiverse conservation hotspots (2022)
Journal Article
Prasetyo, A., Cusa, M., Murray, J., Agung, F., Muttaqin, E., Maraini, S., & McDevitt, A. (2022). Universal closed-tube barcoding for monitoring the shark and ray trade in megadiverse conservation hotspots. bioRxiv, https://doi.org/10.1101/2022.11.30.518468

Trade restrictions for many endangered elasmobranch species exist to disincentivise their exploitation and curb their declines. However, the variety of products and the complexity of import/export routes make trade monitoring challenging. We investig... Read More about Universal closed-tube barcoding for monitoring the shark and ray trade in megadiverse conservation hotspots.

UK DNA working group eDNA week, January 2022 (2022)
Journal Article

Here, we report on eDNA week, an international conference held online as a five‐day series of webinars from January 17, 2022, to January 21, 2022. The conference was organized by the UK DNA working group, which has witnessed considerable growth and a... Read More about UK DNA working group eDNA week, January 2022.

Molecular phylogeny and systematics of bald uakaris, genus Cacajao (Primates: Pitheciidae), with the description of a new species. (2022)
Journal Article

Bald uakaris, genus Cacajao, are Amazonian primates currently classified as one species and four subspecies based on the patterns of pelage coloration. In this study, we test if their current taxonomy is represented by the phylogenetic relationship o... Read More about Molecular phylogeny and systematics of bald uakaris, genus Cacajao (Primates: Pitheciidae), with the description of a new species..

Using eDNA to construct community assemblages of amphibians at sites infected with Batrachochytrium salamandrivorans in the Netherlands. (2022)
Thesis

Amphibians worldwide are in decline with one of the main culprits being the fungal disease chytridiomycosis. This fungus affects the skin of amphibians, leading to excessive skin shedding or skin lesions which, in many cases, result in death. The rec... Read More about Using eDNA to construct community assemblages of amphibians at sites infected with Batrachochytrium salamandrivorans in the Netherlands..

Environmental DNA metabarcoding and citizen science as a cost-effective and rapid tool for monitoring terrestrial mammalian species (2022)
Thesis
Lavin, J. Environmental DNA metabarcoding and citizen science as a cost-effective and rapid tool for monitoring terrestrial mammalian species. (Dissertation). University of Salford

The use of environmental DNA (eDNA) has become increasingly important as a surveying technique for monitoring rare, elusive and/or invasive species. eDNA metabarcoding (which targets multiple species simultaneously) has been frequently used to monito... Read More about Environmental DNA metabarcoding and citizen science as a cost-effective and rapid tool for monitoring terrestrial mammalian species.

Next‐generation phylogeography resolves post‐glacial colonization patterns in a widespread carnivore, the red fox (Vulpes vulpes), in Europe (2021)
Journal Article

Carnivores tend to exhibit a lack of (or less pronounced) genetic structure at continental scales in both a geographic and temporal sense and this can confound the identification of post-glacial colonization patterns in this group. In this study we u... Read More about Next‐generation phylogeography resolves post‐glacial colonization patterns in a widespread carnivore, the red fox (Vulpes vulpes), in Europe.

Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome (2021)
Journal Article

Interactions between hosts and their resident microbial communities are a fundamental component of fitness for both agents. Though recent research has highlighted the importance of interactions between animals and their bacterial communities, compara... Read More about Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome.

Mapping differences in mammalian distributions and diversity using environmental DNA from rivers (2021)
Journal Article

Finding more efficient ways to monitor and estimate the diversity of mammalian communities is a major step towards their management and conservation. Environmental DNA (eDNA) from river water has recently been shown to be a viable method for biomonit... Read More about Mapping differences in mammalian distributions and diversity using environmental DNA from rivers.

Estuarine molecular bycatch as a landscape-wide biomonitoring tool (2021)
Journal Article

Environmental DNA analysis is rapidly transforming biodiversity monitoring and bolstering conservation applications worldwide. This approach has been assisted by the development of metabarcoding PCR primers that are suited for detection of a wide ran... Read More about Estuarine molecular bycatch as a landscape-wide biomonitoring tool.

Shark and ray trade in and out of Indonesia : addressing knowledge gaps on the path to sustainability (2021)
Journal Article

Indonesian marine resources are among the richest on the planet, sustaining highly diverse fisheries. These fisheries include the largest shark and ray landings in the world, making Indonesia one of the world’s largest exporters of elasmobranch produ... Read More about Shark and ray trade in and out of Indonesia : addressing knowledge gaps on the path to sustainability.

Are we using eDNA metabarcoding to its full potential? (2021)
Journal Article
Coscia, I., & McDevitt, A. (2021). Are we using eDNA metabarcoding to its full potential?. Fish and Fisheries, 22(4), 665-666. https://doi.org/10.1111/faf.12582

Editorial.

Primer biases in the molecular assessment of diet in multiple insectivorous mammals (2021)
Journal Article

Our understanding of trophic interactions of small insectivorous mammals has been drastically improved with the advent of DNA metabarcoding. The technique has continued to be optimised over the years, with primer choice repeatedly being a vital facto... Read More about Primer biases in the molecular assessment of diet in multiple insectivorous mammals.

eDNA in a bottleneck : obstacles to fish metabarcoding studies in megadiverse freshwater systems (2021)
Journal Article

The current capacity of environmental DNA (eDNA) to provide accurate insights into the biodiversity of megadiverse regions (e.g., the Neotropics) requires further evaluation to ensure its reliability for long‐term monitoring. In this study, we first... Read More about eDNA in a bottleneck : obstacles to fish metabarcoding studies in megadiverse freshwater systems.

Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome (2021)
Other

Interactions between hosts and their resident microbial communities are a fundamental component of fitness for both agents. Though recent research has highlighted the importance of interactions between animals and their bacterial communities, compara... Read More about Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome.

Comparing fine-scale temporal environmental DNA (eDNA) sampling to camera trapping for detecting mammalian carnivores (2021)
Thesis
Bolton, P. Comparing fine-scale temporal environmental DNA (eDNA) sampling to camera trapping for detecting mammalian carnivores. (Dissertation). University of Salford

Anthropogenic pressures have caused global species declines, making accurate biodiversity monitoring essential in providing data to help avert extinctions. One-fifth of mammalian species globally are classed as under threat which means a rapid, relia... Read More about Comparing fine-scale temporal environmental DNA (eDNA) sampling to camera trapping for detecting mammalian carnivores.

eDNA in a bottleneck : obstacles to fish metabarcoding studies in megadiverse freshwater systems (2021)
Other

The current capacity of environmental DNA (eDNA) to provide accurate insights into the biodiversity of megadiverse regions (e.g., the Neotropics) requires further evaluation to ensure its reliability for long-term monitoring. In this study, we first... Read More about eDNA in a bottleneck : obstacles to fish metabarcoding studies in megadiverse freshwater systems.

Using environmental DNA metabarcoding to monitor fish biodiversity and assess anthropogenic barrier impacts on the river Mersey, UK (2020)
Thesis
Perkins, J. Using environmental DNA metabarcoding to monitor fish biodiversity and assess anthropogenic barrier impacts on the river Mersey, UK. (Dissertation). University of Salford

Freshwater habitats, despite their limited volume, support almost 10% of global biodiversity and are facing increased anthropogenic threats worldwide. Dams and weirs, for example, create habitat fragmentation, changing water flow and water levels, bl... Read More about Using environmental DNA metabarcoding to monitor fish biodiversity and assess anthropogenic barrier impacts on the river Mersey, UK.