Outputs (57)

Estuarine molecular bycatch as a landscape-wide biomonitoring tool (2021)
Journal Article
Mariani, S., Harper, L., Collins, R., Baillie, C., Wangensteen, O., McDevitt, A., …Genner, M. (2021). Estuarine molecular bycatch as a landscape-wide biomonitoring tool. Biological Conservation, 261, 109287. https://doi.org/10.1016/j.biocon.2021.109287

Environmental DNA analysis is rapidly transforming biodiversity monitoring and bolstering conservation applications worldwide. This approach has been assisted by the development of metabarcoding PCR primers that are suited for detection of a wide ran... Read More about Estuarine molecular bycatch as a landscape-wide biomonitoring tool.

Shark and ray trade in and out of Indonesia : addressing knowledge gaps on the path to sustainability (2021)
Journal Article
Prasetyo, A., McDevitt, A., Murray, J., Barry, J., Agung, F., Muttaqin, E., & Mariani, S. (2021). Shark and ray trade in and out of Indonesia : addressing knowledge gaps on the path to sustainability. Marine Policy, 133, 104714. https://doi.org/10.1016/j.marpol.2021.104714

Indonesian marine resources are among the richest on the planet, sustaining highly diverse fisheries. These fisheries include the largest shark and ray landings in the world, making Indonesia one of the world’s largest exporters of elasmobranch produ... Read More about Shark and ray trade in and out of Indonesia : addressing knowledge gaps on the path to sustainability.

Meta‐Fish‐Lib : a generalised, dynamic DNA reference library pipeline for metabarcoding of fishes (2021)
Journal Article
Collins, R., Trauzzi, G., Maltby, K., Gibson, T., Ratcliffe, F., Hallam, J., …Genner, M. (2021). Meta‐Fish‐Lib : a generalised, dynamic DNA reference library pipeline for metabarcoding of fishes. Journal of Fish Biology, 99(4), 1446-1454. https://doi.org/10.1111/jfb.14852

The accuracy and reliability of DNA metabarcoding analyses depend on the breadth and quality of the reference libraries that underpin them. However, there are limited options available to obtain and curate the huge volumes of sequence data that are a... Read More about Meta‐Fish‐Lib : a generalised, dynamic DNA reference library pipeline for metabarcoding of fishes.

Validation of FASTFISH-ID : a new commercial platform for rapid fish species authentication via universal closed-tube barcoding (2021)
Journal Article
Naaum, A., Cusa, M., Singh, M., Bleicher, Z., Elliott, C., Goodhead, I., …Sanchez, J. (2021). Validation of FASTFISH-ID : a new commercial platform for rapid fish species authentication via universal closed-tube barcoding. Food Research International, 141, 110035. https://doi.org/10.1016/j.foodres.2020.110035

Seafood represents up to 20% of animal protein consumption in global food consumption and is a critical dietary and income resource for the world’s population. Currently, over 30% of marine fish stocks are harvested at unsustainable levels, and the i... Read More about Validation of FASTFISH-ID : a new commercial platform for rapid fish species authentication via universal closed-tube barcoding.

Space-time dynamics in monitoring neotropical fish communities using eDNA metabarcoding (2020)
Journal Article
Sales, N., Wangensteen Fuentes, O., Carvalho, D., Deiner, K., Praebel, K., Coscia, I., …Mariani, S. (2021). Space-time dynamics in monitoring neotropical fish communities using eDNA metabarcoding. Science of the Total Environment, 754, 142096. https://doi.org/10.1016/j.scitotenv.2020.142096

The biodiverse Neotropical ecoregion remains insufficiently assessed, poorly managed, and threatened by unregulated human activities. Novel, rapid and cost-effective DNA-based approaches are valuable to improve understanding of the biological communi... Read More about Space-time dynamics in monitoring neotropical fish communities using eDNA metabarcoding.

Fishing for mammals : landscape-level monitoring of terrestrial and semi-aquatic communities using eDNA from riverine systems (2020)
Journal Article
Sales, N., McKenzie, M., Drake, J., Harper, L., Browett, S., Coscia, I., …McDevitt, A. (2020). Fishing for mammals : landscape-level monitoring of terrestrial and semi-aquatic communities using eDNA from riverine systems. Journal of Applied Ecology, 57(4), 707-716. https://doi.org/10.1111/1365-2664.13592

1. Environmental DNA (eDNA) metabarcoding has revolutionised biomonitoring in both marine and freshwater ecosystems. However, for semi-aquatic and terrestrial animals, the application of this technique remains relatively untested. 2. We first ass... Read More about Fishing for mammals : landscape-level monitoring of terrestrial and semi-aquatic communities using eDNA from riverine systems.

Behavioural responses in a congested sea : an observational study on a coastal nest-guarding fish (2019)
Journal Article
Mascolino, S., Mariani, S., & Benvenuto, C. (2019). Behavioural responses in a congested sea : an observational study on a coastal nest-guarding fish. The European Zoological Journal, 86(1), 504-518. https://doi.org/10.1080/24750263.2019.1699611

The deleterious effects of anthropogenic noise on animal communication are nowadays recognised, not only in urban environments but also in terrestrial habitats and along coasts and in open waters. Yet, the assessment of short- and long-term exposure... Read More about Behavioural responses in a congested sea : an observational study on a coastal nest-guarding fish.

Biodiversity assessment of tropical shelf eukaryotic communities via pelagic eDNA metabarcoding (2019)
Journal Article
Bakker, J., Wangensteen Fuentes, O., Baillie, C., Buddo, D., Chapman, D., Gallagher, A., …Mariani, S. (2019). Biodiversity assessment of tropical shelf eukaryotic communities via pelagic eDNA metabarcoding. Ecology and Evolution, 9(24), 14341-14355. https://doi.org/10.1002/ece3.5871

Our understanding of marine communities and their functions in an ecosystem relies on the ability to detect and monitor species distributions and abundances. Currently, the use of environmental DNA (eDNA) metabarcoding is increasingly being applied f... Read More about Biodiversity assessment of tropical shelf eukaryotic communities via pelagic eDNA metabarcoding.

Non‐specific amplification compromises environmental DNA metabarcoding with COI (2019)
Journal Article
Collins, R., Bakker, J., Wangensteen Fuentes, O., Soto, A., Corrigan, L., Sims, D., …Mariani, S. (2019). Non‐specific amplification compromises environmental DNA metabarcoding with COI. Methods in Ecology and Evolution, 10(11), 1985-2001. https://doi.org/10.1111/2041-210X.13276

1.Metabarcoding extra‐organismal DNA from environmental samples is now a key technique in aquatic biomonitoring and ecosystem health assessment. Of critical consideration when designing experiments, and especially so when developing community standar... Read More about Non‐specific amplification compromises environmental DNA metabarcoding with COI.

Environmental DNA metabarcoding as an effective and rapid tool for fish monitoring in canals (2019)
Journal Article
McDevitt, A., Sales, N., Browett, S., Sparnenn, A., Mariani, S., Wangensteen Fuentes, O., …Benvenuto, C. (2019). Environmental DNA metabarcoding as an effective and rapid tool for fish monitoring in canals. Journal of Fish Biology, 95(2), 679-682. https://doi.org/10.1111/jfb.14053

We focus on a case study along an English canal comparing environmental DNA (eDNA) metabarcoding with two types of electrofishing techniques (wade‐and‐reach and boom‐boat). In addition to corroborating data obtained by electrofishing, eDNA provided a... Read More about Environmental DNA metabarcoding as an effective and rapid tool for fish monitoring in canals.