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Taxonomic review of Saguinus mystax (Spix, 1823) (Primates, Callitrichidae), and description of a new species (2023)
Journal Article
Lopes, G., Rohe, F., Bertuol, F., Polo, E., Lima, I., Valsecchi, J., …Hrbek, T. (2023). Taxonomic review of Saguinus mystax (Spix, 1823) (Primates, Callitrichidae), and description of a new species. PeerJ, 11, e14526. https://doi.org/10.7717/peerj.14526

Although the Amazon has the greatest diversity of primates, there are still taxonomic uncertainties for many taxa, such as the species of the Saguinus mystax group. The most geographically broadly distributed and phenotypically diverse species in thi... Read More about Taxonomic review of Saguinus mystax (Spix, 1823) (Primates, Callitrichidae), and description of a new species.

Phylogenetics and an updated taxonomic status of the Tamarins (Callitrichinae, Cebidae) (2022)
Journal Article
Brcko, I., Carneiro, J., Ruiz-García, M., Boubli, J., Silva-Júnior, J., Farias, I., …Sampaio, I. (2022). Phylogenetics and an updated taxonomic status of the Tamarins (Callitrichinae, Cebidae). Molecular Phylogenetics and Evolution, 173, 107504. https://doi.org/10.1016/j.ympev.2022.107504

Traditionally, Saguinus has been organized into six taxonomic groups: bicolor, inustus, midas, mystax, nigricollis, and oedipus. After recent revisions, taxonomic reclassifications were proposed, including (1) the recognition of Leontocebus as a new... Read More about Phylogenetics and an updated taxonomic status of the Tamarins (Callitrichinae, Cebidae).

Molecular phylogeny and systematics of bald uakaris, genus Cacajao (Primates: Pitheciidae), with the description of a new species. (2022)
Journal Article
Ennes Silva, F., Valsecchi do Amaral, J., Roos, C., Bowler, M., Röhe, F., Sampaio, R., …Boubli, J. (2022). Molecular phylogeny and systematics of bald uakaris, genus Cacajao (Primates: Pitheciidae), with the description of a new species. Molecular Phylogenetics and Evolution, 173, https://doi.org/10.1016/j.ympev.2022.107509

Bald uakaris, genus Cacajao, are Amazonian primates currently classified as one species and four subspecies based on the patterns of pelage coloration. In this study, we test if their current taxonomy is represented by the phylogenetic relationship o... Read More about Molecular phylogeny and systematics of bald uakaris, genus Cacajao (Primates: Pitheciidae), with the description of a new species..

Amazonia camtrap: A dataset of mammal, bird, and reptile species recorded with camera traps in the Amazon forest. (2022)
Journal Article
Antunes, A., Montanarin, A., Gräbin, D., Monteiro, E., de Pinho, F., Alvarenga, G., …Ribeiro, M. (2022). Amazonia camtrap: A dataset of mammal, bird, and reptile species recorded with camera traps in the Amazon forest. Ecology, 103(9), e3738. https://doi.org/10.1002/ecy.3738

The Amazon forest has the highest biodiversity on earth. However, information on Amazonian vertebrate diversity is still deficient and scattered across the published, peer-reviewed and grey literature and in unpublished raw data. Camera traps are an... Read More about Amazonia camtrap: A dataset of mammal, bird, and reptile species recorded with camera traps in the Amazon forest..

Out of the shadows : multilocus systematics and biogeography of night monkeys suggest a Central Amazonian origin and a very recent widespread southeastward expansion in South America (2022)
Journal Article
Martins-Junior, A., Sampaio, I., Silva, A., Boubli, J., Hrbek, T., Farias, I., …Schneider, H. (2022). Out of the shadows : multilocus systematics and biogeography of night monkeys suggest a Central Amazonian origin and a very recent widespread southeastward expansion in South America. Molecular Phylogenetics and Evolution, 107426. https://doi.org/10.1016/j.ympev.2022.107426

Neotropical primates with a poorly understood taxonomy and biogeography. The number of species in the genus varies from one to nine, depending on the author, and there are at least 18 known karyotypes, varying from 2n = 46 to 2n = 58. Historically, n... Read More about Out of the shadows : multilocus systematics and biogeography of night monkeys suggest a Central Amazonian origin and a very recent widespread southeastward expansion in South America.

On the geographic distribution of the bald uakaris (Cacajao calvus ssp.) in Brazilian Amazonia (2021)
Journal Article
Silva, F., Lemos, L., Ravetta, A., Röhe, F., Sampaio, R., Franco, C., …Boubli, J. (2021). On the geographic distribution of the bald uakaris (Cacajao calvus ssp.) in Brazilian Amazonia. Primate conservation, 35, 1-18

An understanding of a species’ geographic distribution is essential to assess, plan, and develop strategies for its conservation. The geographic distribution of the bald uakari, Cacajao calvus, and its component subspecies has been poorly investiga... Read More about On the geographic distribution of the bald uakaris (Cacajao calvus ssp.) in Brazilian Amazonia.

Uncertainty regarding species delimitation, geographic distribution, and the evolutionary history of south-central Amazonian titi monkey species (Plecturocebus, Pitheciidae) (2021)
Journal Article
Byrne, H., Costa-Araujo, R., Farias, I., Silva, M., Messias, M., Hrbek, T., & Boubli, J. (2021). Uncertainty regarding species delimitation, geographic distribution, and the evolutionary history of south-central Amazonian titi monkey species (Plecturocebus, Pitheciidae). International Journal of Primatology,

Platyrrhine primate taxonomy is a rapidly evolving area of research. The recent description of the Parecis titi monkey, Plecturocebus parecis, has raised substantial questions regarding the taxonomy, distribution, and evolutionary history of titi tax... Read More about Uncertainty regarding species delimitation, geographic distribution, and the evolutionary history of south-central Amazonian titi monkey species (Plecturocebus, Pitheciidae).

Assessing the potential of environmental DNA metabarcoding for monitoring Neotropical mammals : a case study in the Amazon and Atlantic Forest, Brazil (2019)
Other
Sales, N., Da Cruz Kaizer, M., Coscia, I., Perkins, J., Highlands, A., Boubli, J., …McDevitt, A. (2019). Assessing the potential of environmental DNA metabarcoding for monitoring Neotropical mammals : a case study in the Amazon and Atlantic Forest, Brazil

The application of environmental DNA (eDNA) metabarcoding as a biomonitoring tool has greatly increased in the last decade. However, most studies have focused on aquatic macro-organisms in temperate areas (e.g., fishes). We apply eDNA metabarcoding t... Read More about Assessing the potential of environmental DNA metabarcoding for monitoring Neotropical mammals : a case study in the Amazon and Atlantic Forest, Brazil.

On the taxonomic history and true identity of the collared titi, cheracebus torquatus (Hoffmannsegg, 1807) (Platyrrhini, Callicebinae) (2020)
Journal Article
Byrne, H., Rylands, A., Nash, S., & Boubli, J. (2020). On the taxonomic history and true identity of the collared titi, cheracebus torquatus (Hoffmannsegg, 1807) (Platyrrhini, Callicebinae). Primate conservation, 34, 13-52

The collared titi, Cheracebus torquatus, is paradoxically the least well-defined of the so-called “torquatus group” of Neotropical titi monkeys. Since its description by Hoffmannsegg in 1807, it has been re-characterized numerous times. In this stu... Read More about On the taxonomic history and true identity of the collared titi, cheracebus torquatus (Hoffmannsegg, 1807) (Platyrrhini, Callicebinae).

eDNA in a bottleneck : obstacles to fish metabarcoding studies in megadiverse freshwater systems (2021)
Other
Jackman, J., Benvenuto, C., Coscia, I., Carvalho, C., Ready, J., Boubli, J., …Sales, N. (2021). eDNA in a bottleneck : obstacles to fish metabarcoding studies in megadiverse freshwater systems

The current capacity of environmental DNA (eDNA) to provide accurate insights into the biodiversity of megadiverse regions (e.g., the Neotropics) requires further evaluation to ensure its reliability for long-term monitoring. In this study, we first... Read More about eDNA in a bottleneck : obstacles to fish metabarcoding studies in megadiverse freshwater systems.

Southern expansion of the geographical distribution of Cacajao melanocephalus melanocephalus (1993)
Journal Article
Boubli, J. (1993). Southern expansion of the geographical distribution of Cacajao melanocephalus melanocephalus. International Journal of Primatology, 14(6), 933-937. https://doi.org/10.1007/BF02220262

Cacajao melanocephalus melanocephalus, a subspecies of black uakari, was thought to be restricted to southern Venezuela. Observations of two groups of them in Pico da Neblina National Park, Brazil, suggest that its distribution should be extended to... Read More about Southern expansion of the geographical distribution of Cacajao melanocephalus melanocephalus.

Feeding ecology of black-headed uacaris (Cacajao melanocephalus melanocephalus) in Pico da Neblina National Park, Brazil (1999)
Journal Article
Boubli, J. (1999). Feeding ecology of black-headed uacaris (Cacajao melanocephalus melanocephalus) in Pico da Neblina National Park, Brazil. International Journal of Primatology, 20(5), 719-749. https://doi.org/10.1023/A%3A1020704819367

From June 1994 to October 1995, I conducted a study of the feeding ecology of one group of black-headed uacaris (Cacajao melanocephalus melanocephalus) in Pico da Neblina National Park, Brazil, near the Venezuelan border (01°10′N to 00°26′S, 65°03′W... Read More about Feeding ecology of black-headed uacaris (Cacajao melanocephalus melanocephalus) in Pico da Neblina National Park, Brazil.

The time of divergence between the two species of uacari monkeys : Cacajao calvus and Cacajao melanocephalus (2001)
Journal Article
Boubli, J., & Ditchfield, A. (2001). The time of divergence between the two species of uacari monkeys : Cacajao calvus and Cacajao melanocephalus. Folia Primatologica, 71(6), 387-391. https://doi.org/10.1159/000052735

It has been suggested in the literature that primates of the genus Cacajao have been restricted to flooded-forest habitats of western Amazonia since their split from the Chiropotes line in the Tertiary. It has been proposed further that the different... Read More about The time of divergence between the two species of uacari monkeys : Cacajao calvus and Cacajao melanocephalus.

Lowland floristic assessment of Pico da Neblina National Park, Brazil (2002)
Journal Article
Boubli, J. (2002). Lowland floristic assessment of Pico da Neblina National Park, Brazil. Plant Ecology, 160(2), 149-167. https://doi.org/10.1023/A%3A1015832811209

Pico da Neblina National Park, located in north-western Amazonia,Brazil, is characterized by considerable habitat diversity resulting from anorographic zonation of vegetation (from 100 to 3,014 m above sealevel) and a mosaic pattern of soil types wit... Read More about Lowland floristic assessment of Pico da Neblina National Park, Brazil.

Morphologic, karyotypic, and molecular evidence of a new form of Chiropotes (Primates, Pitheciinae) (2003)
Journal Article
Bonvicino, C., Boubli, J., Otazú, I., Almeida, F., Nascimento, F., Coura, J., & Seuánez, H. (2003). Morphologic, karyotypic, and molecular evidence of a new form of Chiropotes (Primates, Pitheciinae). American Journal of Primatology, 61(3), 123-133. https://doi.org/10.1002/ajp.10115

Morphologic, karyotypic, and molecular analyses were carried out in 25 specimens of a distinct morph of Chiropotes (henceforth termed Chiropotes sp.) obtained from a number of localities in the Brazilian Amazon. Pelage coloration clearly distinguishe... Read More about Morphologic, karyotypic, and molecular evidence of a new form of Chiropotes (Primates, Pitheciinae).

Mesoscale transect sampling of trees in the Lomako-Yekokora interfluvium, Democratic Republic of the Congo (2004)
Journal Article
Boubli, J., Eriksson, J., Wich, S., Hohmann, G., & Fruth, B. (2004). Mesoscale transect sampling of trees in the Lomako-Yekokora interfluvium, Democratic Republic of the Congo. Biodiversity and Conservation, 13(13), 2399-2417. https://doi.org/10.1023/B%3ABIOC.0000048445.27943.81

We conducted a mesoscale transect sampling of trees ≥10 cm DBH in the Lomako-Yekokora interfluvial forest, Democratic Republic of the Congo. Our objective was to characterize the forest landscape contained between the Lomako and Yekokora rivers in te... Read More about Mesoscale transect sampling of trees in the Lomako-Yekokora interfluvium, Democratic Republic of the Congo.

Floristics, primary productivity and primate diversity in Amazonia : contrasting a eutrophic várzea forest and an oligotrophic caatinga forest in Brazil (2005)
Book Chapter
Boubli, J. (2005). Floristics, primary productivity and primate diversity in Amazonia : contrasting a eutrophic várzea forest and an oligotrophic caatinga forest in Brazil. In J. Dew, & J. Boubli (Eds.), Tropical fruits and frugivores : the search for strong interactors (59-73). Springer. https://doi.org/10.1007/1-4020-3833-X_4

Several factors such as rainfall, primary productivity, and plant species richness have been hypothesized to affect consumer species richness, possibly explaining differences in species richness among communities and on different continents. Primary... Read More about Floristics, primary productivity and primate diversity in Amazonia : contrasting a eutrophic várzea forest and an oligotrophic caatinga forest in Brazil.

Population demography of Northern Muriquis (Brachyteles hypoxanthus) at the Estação Biológica de Caratinga/Reserva Particular do Patrimônio Natural-Felìciano Miguel Abdala, Minas Gerais, Brazil (2005)
Journal Article
Strier, K., Boubli, J., Possamai, C., & Mendes, S. (2006). Population demography of Northern Muriquis (Brachyteles hypoxanthus) at the Estação Biológica de Caratinga/Reserva Particular do Patrimônio Natural-Felìciano Miguel Abdala, Minas Gerais, Brazil. American Journal of Physical Anthropology, 130(2), 227-237. https://doi.org/10.1002/ajpa.20366

The 957-ha forest at the Estação Biológica de Caratinga/Reserva Particular do Patrimônio Natural-Felìciano Miguel Abdala, in Minas Gerais, Brazil, supports one of the largest known populations of the critically endangered northern muriqui (Brachytele... Read More about Population demography of Northern Muriquis (Brachyteles hypoxanthus) at the Estação Biológica de Caratinga/Reserva Particular do Patrimônio Natural-Felìciano Miguel Abdala, Minas Gerais, Brazil.

Ground use by northern muriquis (Brachyteles hypoxanthus) (2007)
Journal Article
Mourthé, I., Guedes, D., Fidelis, J., Boubli, J., Mendes, S., & Strier, K. (2007). Ground use by northern muriquis (Brachyteles hypoxanthus). American Journal of Primatology, 69(6), 706-712. https://doi.org/10.1002/ajp.20405

Many arboreal primates descend to the ground, a custom that may occur more frequently in disturbed habitats, and in the presence of researchers to whom the primates are habituated. In this paper, we describe opportunistic observations of ground use i... Read More about Ground use by northern muriquis (Brachyteles hypoxanthus).

Is the Atlantic Forest protected area network efficient in maintaining viable populations of Brachyteles hypoxanthus? (2008)
Journal Article
Brito, D., Grelle, C., & Boubli, J. (2008). Is the Atlantic Forest protected area network efficient in maintaining viable populations of Brachyteles hypoxanthus?. Biodiversity and Conservation, 17(13), 3255-3268. https://doi.org/10.1007/s10531-008-9427-z

Habitat loss and fragmentation are serious threats to biodiversity conservation in the Atlantic Forest. A network of protected areas is essential to the protection of native biodiversity. However, internal and external factors may threaten the preser... Read More about Is the Atlantic Forest protected area network efficient in maintaining viable populations of Brachyteles hypoxanthus?.

Genetic structure in two northern muriqui populations (Brachyteles hypoxanthus, Primates, Atelidae) as inferred from fecal DNA (2008)
Journal Article
Fagundes, V., Paes, M., Chaves, P., Mendes, S., Possamai, C. D. B., Boubli, J., & Strier, K. (2008). Genetic structure in two northern muriqui populations (Brachyteles hypoxanthus, Primates, Atelidae) as inferred from fecal DNA. Genetics and Molecular Biology (Impresso), 31(1), 166-171. https://doi.org/10.1590/S1415-47572008000100028

We assessed the genetic diversity of two northern muriqui (Brachyteles hypoxanthus Primata, Atelidae) populations, the Feliciano Miguel Abdala population (FMA, n = 108) in the Brazilian state of Minas Gerais (19°44' S, 41°49' W) and the Santa Maria d... Read More about Genetic structure in two northern muriqui populations (Brachyteles hypoxanthus, Primates, Atelidae) as inferred from fecal DNA.

Modeling the geographical distribution and fundamental niches of Cacajao spp. and Chiropotes israelita in Northwestern Amazonia via a maximum entropy algorithm (2009)
Journal Article
Boubli, J., & de Lima, M. (2009). Modeling the geographical distribution and fundamental niches of Cacajao spp. and Chiropotes israelita in Northwestern Amazonia via a maximum entropy algorithm. International Journal of Primatology, 30(2), 217-228. https://doi.org/10.1007/s10764-009-9335-4

We modeled the geographical distribution of 4 pithecine primate species: brown-backed bearded sakis (Chiropotes israelita) and 3 black uakaris (Cacajao melanocephalus, C. hosomi, and C. ayresi) that inhabit remote regions of western Amazonas, Brazil.... Read More about Modeling the geographical distribution and fundamental niches of Cacajao spp. and Chiropotes israelita in Northwestern Amazonia via a maximum entropy algorithm.

Distribution, population size and conservation of the endemic muriquis (brachyteles spp.) of the arazilian Atlantic forest (2009)
Journal Article
Cunha, A., Viveiros Grelle, C., & Boubli, J. (2009). Distribution, population size and conservation of the endemic muriquis (brachyteles spp.) of the arazilian Atlantic forest. Oryx, 43(2), 254-257. https://doi.org/10.1017/S003060530700230X

Muriquis are endemic primates of the Brazilian Atlantic Forest, with two recognized species: Brachyteles hypoxanthus and Brachyteles arachnoides. Although the state of Rio de Janeiro is the type locality for B. arachnoides the muriqui population of t... Read More about Distribution, population size and conservation of the endemic muriquis (brachyteles spp.) of the arazilian Atlantic forest.

Structure and floristic composition of one of the last forest fragments containing the critically endangered Northern Muriqui (Brachyteles Hypoxanthus, Primates) (2011)
Journal Article
Boubli, J., Couto-Santos, F., & Strier, K. (2011). Structure and floristic composition of one of the last forest fragments containing the critically endangered Northern Muriqui (Brachyteles Hypoxanthus, Primates). Ecotropica (Bonn), 17(2), 53-69

This study presents results from the first systematic botanical investigation of the RPPN Feliciano Miguel Abdala (RPPN-FMA, formerly Caratinga Biological Station), a semi-deciduous forest fragment in southeastern Brazil that supports nearly a thir... Read More about Structure and floristic composition of one of the last forest fragments containing the critically endangered Northern Muriqui (Brachyteles Hypoxanthus, Primates).

Social cliques in male northern muriquis Brachyteles hypoxanthus (2012)
Journal Article
Tokuda, M., Boubli, J., Izar, P., & Strier, K. (2012). Social cliques in male northern muriquis Brachyteles hypoxanthus. Current Zoology, 58(2), 342-352. https://doi.org/10.1093/czoolo/58.2.342

Analyses of spatial relationships and social interactions provide insights into the social structure of animal societies and the ways in which social preferences among and between dyads affect higher order social relationships. In this paper we descr... Read More about Social cliques in male northern muriquis Brachyteles hypoxanthus.

The Munduruku marmoset : a new monkey species from southern Amazonia (2019)
Journal Article
Costa-Araújo, R., de Melo, F., Canale, G., Hernández-Rangel, S., Messias, M., Rossi, R., …Hrbek, T. (2019). The Munduruku marmoset : a new monkey species from southern Amazonia. PeerJ, 7, e7019. https://doi.org/10.7717/peerj.7019

Although the Atlantic Forest marmosets (Callithrix spp.) are among the best studied Neotropical primates, the Amazonian marmosets (Callibella humilis, Cebuella spp. and Mico spp.) are much less well-known. Even species diversity and distributions are... Read More about The Munduruku marmoset : a new monkey species from southern Amazonia.

Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome (2021)
Other
Harrison, X., McDevitt, A., Dunn, J., Griffiths, S., Benvenuto, C., Birtles, R., …Antwis, R. (2021). Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome

Interactions between hosts and their resident microbial communities are a fundamental component of fitness for both agents. Though recent research has highlighted the importance of interactions between animals and their bacterial communities, compara... Read More about Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome.

An integrative analysis uncovers a new, pseudo-cryptic species of Amazonian marmoset (Primates: Callitrichidae: Mico) from the arc of deforestation (2021)
Journal Article
Costa-Araújo, R., Silva-Jr., J., Boubli, J., Rossi, R., Canale, G., Melo, F., …Hrbek, T. (2021). An integrative analysis uncovers a new, pseudo-cryptic species of Amazonian marmoset (Primates: Callitrichidae: Mico) from the arc of deforestation. Scientific reports, 11(1), 15665. https://doi.org/10.1038/s41598-021-93943-w

Amazonia has the richest primate fauna in the world. Nonetheless, the diversity and distribution of Amazonian primates remain little known and the scarcity of baseline data challenges their conservation. These challenges are especially acute in the A... Read More about An integrative analysis uncovers a new, pseudo-cryptic species of Amazonian marmoset (Primates: Callitrichidae: Mico) from the arc of deforestation.

Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome (2021)
Journal Article
Harrison, X., McDevitt, A., Dunn, J., Grifftihs, S., Benvenuto, C., Birtles, R., …Antwis, R. (2021). Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome. Proceedings of the Royal Society B: Biological Sciences, 288(1957), 20210552. https://doi.org/10.1098/rspb.2021.0552

Interactions between hosts and their resident microbial communities are a fundamental component of fitness for both agents. Though recent research has highlighted the importance of interactions between animals and their bacterial communities, compara... Read More about Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome.

eDNA in a bottleneck : obstacles to fish metabarcoding studies in megadiverse freshwater systems (2021)
Journal Article
Jackman, J., Benvenuto, C., Coscia, I., Carvalho, C., Ready, J., Boubli, J., …Sales, N. (2021). eDNA in a bottleneck : obstacles to fish metabarcoding studies in megadiverse freshwater systems. Environmental DNA, 3(4), 837-849. https://doi.org/10.1002/edn3.191

The current capacity of environmental DNA (eDNA) to provide accurate insights into the biodiversity of megadiverse regions (e.g., the Neotropics) requires further evaluation to ensure its reliability for long‐term monitoring. In this study, we first... Read More about eDNA in a bottleneck : obstacles to fish metabarcoding studies in megadiverse freshwater systems.

Parapatric pied and red-handed tamarin responses to congeneric and conspecific calls (2020)
Journal Article
Sobroza, T., Gordo, M., Barnett, A., Boubli, J., & Spironello, W. (2021). Parapatric pied and red-handed tamarin responses to congeneric and conspecific calls. Acta oecologica, 110, 103688. https://doi.org/10.1016/j.actao.2020.103688

Aggressive behaviors are widespread among territorial species and asymmetrical aggressiveness may imply differential access to resources. At a larger scale, such asymmetry may also drive shifts in geographic distributions. The pied tamarin (Saguinus... Read More about Parapatric pied and red-handed tamarin responses to congeneric and conspecific calls.

Microsatellite markers for bearded capuchins (Sapajus libidinosus) : transferability and characterization (2021)
Journal Article
Moraes, B., Borges, D., Souza-Alves, J., Boubli, J., & Bezerra, B. (2021). Microsatellite markers for bearded capuchins (Sapajus libidinosus) : transferability and characterization. Anais da Academia Brasileira de Ciências (Impresso), 93(2), e20190802. https://doi.org/10.1590/0001-3765202120190802

Natural Sapajus libidinosus populations are in continuous decline due to fragmentation, habitat loss, and the illegal pet trade. They live in Caatinga scrub forests, which already lost over 50% of their original cover. The lack of studies on S. libid... Read More about Microsatellite markers for bearded capuchins (Sapajus libidinosus) : transferability and characterization.

Habitat suitability for primate conservation in north-east Brazil (2020)
Journal Article
Moraes, B., Razgour, O., Souza-Alves, J., Boubli, J., & Bezerra, B. (2020). Habitat suitability for primate conservation in north-east Brazil. Oryx, 54(6), 803-813. https://doi.org/10.1017/S0030605319001388

Brazil has a high diversity of primates, but increasing anthropogenic pressures and climate change could influence forest cover in the country and cause future changes in the distribution of primate populations. Here we aim to assess the long-term su... Read More about Habitat suitability for primate conservation in north-east Brazil.

Phylogenetic relationships in the genus Cheracebus (Callicebinae, Pitheciidae) (2020)
Journal Article
Carneiro, J., Sampaio, I., Lima, T., Silva-Júnior, J. D. S., Farias, I., Hrbek, T., …Schneider, H. (2020). Phylogenetic relationships in the genus Cheracebus (Callicebinae, Pitheciidae). American Journal of Primatology, 82(9), e23167. https://doi.org/10.1002/ajp.23167

Cheracebus is a new genus of New World primate of the family Pitheciidae, subfamily Callicebinae. Until recently, Cheracebus was classified as the torquatus species group of the genus Callicebus. The genus Cheracebus has six species: C. lucifer, C. l... Read More about Phylogenetic relationships in the genus Cheracebus (Callicebinae, Pitheciidae).

Assessing the potential of environmental DNA metabarcoding for monitoring Neotropical mammals : a case study in the Amazon and Atlantic Forest, Brazil (2020)
Journal Article
Sales, N., Da Cruz Kaizer, M., Coscia, I., Perkins, J., Highlands, A., Boubli, J., …McDevitt, A. (2020). Assessing the potential of environmental DNA metabarcoding for monitoring Neotropical mammals : a case study in the Amazon and Atlantic Forest, Brazil. Mammal Review, 50(3), 221-225. https://doi.org/10.1111/mam.12183

The application of environmental DNA (eDNA) metabarcoding as a biomonitoring tool has greatly increased in the last decade. However, most studies have focused on aquatic macro-organisms in temperate areas (e.g., fishes). We apply eDNA metabarcoding t... Read More about Assessing the potential of environmental DNA metabarcoding for monitoring Neotropical mammals : a case study in the Amazon and Atlantic Forest, Brazil.

On a new species of titi monkey (Primates: Plecturocebus Byrne et al., 2016), from Alta Floresta, southern Amazon, Brazil (2018)
Journal Article
Boubli, J., Byrne, H., da Silva, M., Silva-Júnior, J., Costa Araújo, R., Bertuol, F., …Hrbek, T. (2018). On a new species of titi monkey (Primates: Plecturocebus Byrne et al., 2016), from Alta Floresta, southern Amazon, Brazil. Molecular Phylogenetics and Evolution, 132(Mar 19), 117-137. https://doi.org/10.1016/j.ympev.2018.11.012

The taxonomy of the titi monkeys (Callicebinae) has recently received considerable attention. It is now recognised that this subfamily is composed of three genera with 33 species, seven of them described since 2002. Here, we describe a new species of... Read More about On a new species of titi monkey (Primates: Plecturocebus Byrne et al., 2016), from Alta Floresta, southern Amazon, Brazil.

Predicted distribution and habitat loss for the endangered black-faced black spider monkey Ateles chamek in the Amazon (2018)
Journal Article
Rabelo, R., Gonçalves, J., Silva, F., Rocha, D., Canale, G., Bernardo, C., & Boubli, J. (2020). Predicted distribution and habitat loss for the endangered black-faced black spider monkey Ateles chamek in the Amazon. Oryx, 54(5), 699-705. https://doi.org/10.1017/S0030605318000522

The rate of deforestation in the Amazon is increasing. Predictive models estimate that as a result of agricultural expansion 40% of these forests will be lost by 2050. As a consequence the habitat of forest-dwelling species such as the Endangered bla... Read More about Predicted distribution and habitat loss for the endangered black-faced black spider monkey Ateles chamek in the Amazon.

Titi monkey biogeography : parallel Pleistocene spread by Plecturocebus and Cheracebus into a post-Pebas Western Amazon (2018)
Journal Article
Byrne, H., Lynch Alfaro, J., Sampaio, I., Farias, I., Schneider, H., Hrbek, T., & Boubli, J. (2018). Titi monkey biogeography : parallel Pleistocene spread by Plecturocebus and Cheracebus into a post-Pebas Western Amazon. Zoologica Scripta, 47(5), 499-517. https://doi.org/10.1111/zsc.12300

Titi monkeys, subfamily Callicebinae, are a diverse, species‐rich group of Neotropical primates with an extensive range across South America. Their distribution in space and time makes them an interesting primate model for addressing questions of Neo... Read More about Titi monkey biogeography : parallel Pleistocene spread by Plecturocebus and Cheracebus into a post-Pebas Western Amazon.

A phylogenomic perspective on the robust capuchin monkey (Sapajus) radiation : first evidence for extensive population admixture across South America (2018)
Journal Article
Lima, M., Silva-Junior, J., Cerny, D., Buckner, J., Aleixo, A., Chang, J., …Lynch Alfaro, J. (2018). A phylogenomic perspective on the robust capuchin monkey (Sapajus) radiation : first evidence for extensive population admixture across South America. Molecular Phylogenetics and Evolution, 124, 137-150. https://doi.org/10.1016/j.ympev.2018.02.023

Phylogenetic relationships amongst the robust capuchin monkeys (genus Sapajus) are poorly understood. Morphology-based taxonomies have recognized anywhere from one to twelve different species. The current IUCN (2017) classification lists eight robust... Read More about A phylogenomic perspective on the robust capuchin monkey (Sapajus) radiation : first evidence for extensive population admixture across South America.

The Roosevelt – Rondon expedition marmoset (Mico marcai) : unveiling the conservation status of a data deficient species (2018)
Journal Article
Silva, F., EL Bizri, H., Goncalves, J., Lemos, L., Araujo, R., Lima, I., …Boubli, J. (2020). The Roosevelt – Rondon expedition marmoset (Mico marcai) : unveiling the conservation status of a data deficient species. Oryx, 54(4), 539-545. https://doi.org/10.1017/S0030605318000303

The Roosevelt-Rondon Expedition marmoset, Mico marcai, was collected in 1914 and to date, all information on this species comes from three skins brought back by the Expedition and two additional skins collected in the 1990s. It is no surprise then th... Read More about The Roosevelt – Rondon expedition marmoset (Mico marcai) : unveiling the conservation status of a data deficient species.

Phylogeny, molecular dating and zoogeographic history of the titi monkeys (Callicebus, Pitheciidae) of eastern Brazil (2018)
Journal Article
Carneiro, J., Sampaio, I., Silva-Junior, J., Farias, I., Hrbek, T., Pissinatti, A., …Schneider, H. (2018). Phylogeny, molecular dating and zoogeographic history of the titi monkeys (Callicebus, Pitheciidae) of eastern Brazil. Molecular Phylogenetics and Evolution, 124, 10-15. https://doi.org/10.1016/j.ympev.2018.03.001

The titi monkeys belong to a genus of New World primates endemic to South America, which were recently reclassified in three genera (Cheracebus, Plecturocebus and Callicebus). The genus Callicebus, which currently includes five species, is endemic to... Read More about Phylogeny, molecular dating and zoogeographic history of the titi monkeys (Callicebus, Pitheciidae) of eastern Brazil.

In search of a meaningful classification for Amazonian marmosets : should dwarf marmosets be considered Mico congenerics? (2018)
Journal Article
Silva, F., Costa-Araújo, R., Boubli, J., Santana, M., Franco, C., Bertuol, F., …Hrbek, T. (2018). In search of a meaningful classification for Amazonian marmosets : should dwarf marmosets be considered Mico congenerics?. Zoologica Scripta, 47(2), 133-143. https://doi.org/10.1111/zsc.12278

The criteria to classify the diversity of Neotropical Primates have recently taken the discussion boards due to the reappraisal on the phylogenetic relationship of some groups. Such controversial and arbitrary decisions, however, can hamper conservat... Read More about In search of a meaningful classification for Amazonian marmosets : should dwarf marmosets be considered Mico congenerics?.

How many Pygmy Marmoset (Cebuella Gray, 1870) species are there? A taxonomic re-appraisal based on new molecular evidence (2017)
Journal Article
Boubli, J., da Silva, M., Rylands, A., Nash, S., Bertuol, F., Nunes, M., …Hrbek, T. (2017). How many Pygmy Marmoset (Cebuella Gray, 1870) species are there? A taxonomic re-appraisal based on new molecular evidence. Molecular Phylogenetics and Evolution, 120, 170-182. https://doi.org/10.1016/j.ympev.2017.11.010

The pygmy marmoset, Cebuella pygmaea, the smallest of the New World monkeys, has one of the largest geographical distributions of the Amazonian primates. Two forms have been recognized: Cebuella pygmaea pygmaea (Spix, 1823), and C. p. niveiventris Lö... Read More about How many Pygmy Marmoset (Cebuella Gray, 1870) species are there? A taxonomic re-appraisal based on new molecular evidence.

Medium/Long wavelength sensitive opsin diversity in Pitheciidae (2017)
Journal Article
Goulart, V., Boubli, J., & Young, R. (2017). Medium/Long wavelength sensitive opsin diversity in Pitheciidae. Scientific reports, 7(7737), https://doi.org/10.1038/s41598-017-08143-2

New World primates feature a complex colour vision system. Most species have polymorphic colour vision where males have a dichromatic colour perception and females can be either ichromatic or trichromatic. The adaptive value of high allelic diversity... Read More about Medium/Long wavelength sensitive opsin diversity in Pitheciidae.

Capuchin monkey biogeography : understanding Sapajus Pleistocene range expansion and the current sympatry between Cebus and Sapajus (2017)
Journal Article
Lima, M., Buckner, J., Silva-Júnior, J., Aleixo, A., Martins, A., Boubli, J., …Lynch Alfaro, J. (2017). Capuchin monkey biogeography : understanding Sapajus Pleistocene range expansion and the current sympatry between Cebus and Sapajus. Journal of Biogeography, 44(4), 810-820. https://doi.org/10.1111/jbi.12945

Aim: Our aim was to examine gracile capuchin (Cebus) and robust capuchin monkey (Sapajus) diversification, with a focus on recent Sapajus expansion within Amazonia. We wanted to reconstruct the biogeographical history of the clade using statistical... Read More about Capuchin monkey biogeography : understanding Sapajus Pleistocene range expansion and the current sympatry between Cebus and Sapajus.

Phylogeny of the titi monkeys of the Callicebus moloch group (Pitheciidae, Primates) (2016)
Journal Article
Carneiro, J., Sliva Junior, J., Sampaio, I., Pissinatti, A., Hrbek, T., Messias, M., …Schneider, H. (2016). Phylogeny of the titi monkeys of the Callicebus moloch group (Pitheciidae, Primates). American Journal of Primatology, 78(9), 904-913. https://doi.org/10.1002/ajp.22559

Callicebus is a Neotropical primate genus of the family Pitheciidae, which 27 currently comprises 34 recognized species. Based on their morphological traits 28 and geographic distribution, these species are currently assigned to five groups: the C... Read More about Phylogeny of the titi monkeys of the Callicebus moloch group (Pitheciidae, Primates).

Taxonomic review of the New World tamarins (Primates: Callitrichidae) (2016)
Journal Article
Rylands, A., Heymann, E., Lynch Alfaro, J., Buckner, J., Roos, C., Matauschek, C., …Mittermeier, R. (2016). Taxonomic review of the New World tamarins (Primates: Callitrichidae). Zoological Journal of the Linnean Society, 177(44), 1003-1028. https://doi.org/10.1111/zoj.12386

Twelve generic names have been ascribed to the New World tamarins but all are currently placed in just one: Saguinus Hoffmannsegg, 1807. Based on geographical distributions, morphology, and pelage patterns and coloration, they have been divided into... Read More about Taxonomic review of the New World tamarins (Primates: Callitrichidae).